abyss_2.0.2-1~bpo8+1_arm64.deb
Install the package
sudo apt-get install abyss=2.0.2-1~bpo8+1
de novo, parallel, sequence assembler for short reads
Full description: de novo, parallel, sequence assembler for short reads ABySS is a de novo, parallel, sequence assembler that is designed for short reads. It may be used to assemble genome or transcriptome sequence data. Parallelization is achieved using MPI, OpenMP and pthread.
Checksums
MD5 | 9d9893227c1827aff2e1f2b2881bb425 |
SHA1 | be285ba664654609750027123b4286647ddbd506 |
SHA256 | 4237e9e14a09feb502bb3492c52289c79181486bb04a849c84177b790fccdf97 |
SHA512 | c7e54b4df7b69cfcd6b013b1be4b428344d259356aa25583b7c80b0b8211905350fe5cdd8738177187859901b53337206cc078dfadc17adf55753fada1dbedec |
Depends
- make, libc6 (>= 2.17), libgcc1 (>= 1:4.7), libgomp1 (>= 4.9), libopenmpi1.6, libsqlite3-0 (>= 3.5.9), libstdc++6 (>= 4.9), perl
Suggests
- openmpi-bin
Files
- /usr/lib/abyss/abyss-samtoafg
- /usr/lib/abyss/abyss-pe
- /usr/lib/abyss/abyss-paired-dbg-mpi
- /usr/lib/abyss/abyss-paired-dbg
- /usr/lib/abyss/ABYSS-P
- /usr/lib/abyss/abyss-overlap
- /usr/lib/abyss/abyss-mergepairs
- /usr/lib/abyss/abyss-map-ssq
- /usr/lib/abyss/abyss-map
- /usr/lib/abyss/abyss-longseqdist
- /usr/lib/abyss/abyss-layout
- /usr/lib/abyss/abyss-kaligner
- /usr/lib/abyss/abyss-junction
- /usr/lib/abyss/abyss-index
- /usr/lib/abyss/abyss-gc
- /usr/lib/abyss/abyss-gapfill
- /usr/lib/abyss/abyss-fixmate-ssq
- /usr/lib/abyss/abyss-fixmate
- /usr/lib/abyss/abyss-filtergraph
- /usr/lib/abyss/abyss-fatoagp
- /usr/lib/abyss/abyss-fac
- /usr/lib/abyss/abyss-dida
- /usr/lib/abyss/abyss-db-txt
- /usr/lib/abyss/abyss-db-csv
- /usr/lib/abyss/abyss-bwasw
- /usr/lib/abyss/abyss-bwamem
- /usr/lib/abyss/abyss-bwa
- /usr/lib/abyss/abyss-bowtie2
- /usr/lib/abyss/abyss-bowtie
- /usr/lib/abyss/abyss-bloom-dist.mk
Uploaded
over 5 years agoPackage Size
1.25 MBInstalled Size
6.85 MBDownloads
15
wget
wget --content-disposition "https://packagecloud.io/yoav/testrepo/packages/ubuntu/feisty/abyss_2.0.2-1~bpo8+1_arm64.deb/download.deb?distro_version_id=6"