Cytomine-Python-Client-2.0.2.tar.gz

STEP 1: Have you installed this repository?

If not, run this installation script command:

curl -s https://packagecloud.io/install/repositories/cytomine-uliege/Cytomine-python-client/script.python.sh | bash
copy
curl -s https://packagecloud.io/install/repositories/cytomine-uliege/Cytomine-python-client/script.python.sh | bash

STEP 2: Install the package
sudo pip install cytomine-python-client==2.0.2

Python client to interact with Cytomine.

Full description:
  # Cytomine Python client
 > Cytomine-python-client is an open-source Cytomine client written in Python. This client is a Python wrapper around Cytomine REST API gateway.
 [![Build Status](https://travis-ci.com/Cytomine-ULiege/Cytomine-python-client.svg?branch=master)](https://travis-ci.com/Cytomine-ULiege/Cytomine-python-client)
 [![GitHub release](https://img.shields.io/github/release/Cytomine-ULiege/Cytomine-python-client.svg)](https://github.com/Cytomine-ULiege/Cytomine-python-client/releases)
 [![GitHub](https://img.shields.io/github/license/Cytomine-ULiege/Cytomine-python-client.svg)](https://github.com/Cytomine-ULiege/Cytomine-python-client/blob/master/LICENSE)
 ## Overview
 The main access point to Cytomine data is its REST API. This client is a Python package that can be imported in an application and allows to import/export data from Cytomine-Core and Cytomine-IMS using RESTful web services e.g. to generate annotation (spatial) statistics, create regions of interest (e.g. tumor masks), add metadata to images/annotations, apply algorithms on image tiles, ...
 See [documentation](http://doc.cytomine.be/display/ALGODOC/%5BDOC%5D+Data+access) for more details.
 ## Requirements
 * Python 2.7 | 3.5+
 ## Install
 **To install *official* release of Cytomine-python-client, see @cytomine. Follow this guide to install forked version by ULiege.**
 ### Manual installation
 To download and install manually the package, see [manual installation procedure](http://doc.cytomine.be/display/ALGODOC/How+to+install+the+Cytomine+Python+Client).
 ### Automatic installation
 To retrieve package using Maven or Gradle, see [package repository](https://packagecloud.io/cytomine-uliege/Cytomine-python-client).
 ## Usage
 See [detailed usage documentation](http://doc.cytomine.be/display/DEVDOC/Part+5%3A+Cytomine+Python+Client).
 ### Basic example
 Three parameters are required to connect:
 * `CYTOMINE_URL`: The full URL of Cytomine core (e.g. “http://demo.cytomine.be”).
 * `PUBLIC_KEY`: Your cytomine public key.
 * `PRIVATE_KEY`: Your cytomine private key.
 First, the connection object has to be initialized.
 TODO
 The next sample code should print “Hello {username}” where {username} is replaced by your Cytomine username and print the list of available projects.
 TODO
 ## References
 When using our software, we kindly ask you to cite our website url and related publications in all your work (publications, studies, oral presentations,...). In particular, we recommend to cite (Marée et al., Bioinformatics 2016) paper, and to use our logo when appropriate. See our license files for additional details.
 - URL: http://www.cytomine.org/
 - Logo: [Available here](https://cytomine.coop/sites/cytomine.coop/files/inline-images/logo-300-org.png)
 - Scientific paper: Raphaël Marée, Loïc Rollus, Benjamin Stévens, Renaud Hoyoux, Gilles Louppe, Rémy Vandaele, Jean-Michel Begon, Philipp Kainz, Pierre Geurts and Louis Wehenkel. Collaborative analysis of multi-gigapixel imaging data using Cytomine, Bioinformatics, DOI: [10.1093/bioinformatics/btw013](http://dx.doi.org/10.1093/bioinformatics/btw013), 2016.
 ## License
 Apache 2.0
 ----
 See examples in https://github.com/cytomine/Cytomine-python-client/tree/master/client/examples and https://github.com/cytomine/Cytomine-python-client/tree/master/utilities/examples
 The client is automatically installed with the Docker/Bootstrap procedure, however it is possible to install it independently
 on remote computers. See installation instructions here:
 http://doc.cytomine.be/pages/viewpage.action?pageId=12321357

Checksums

MD5 2aac9c161a1a1b186902bde4a8c625e0
SHA1 ca63b433d925683dc9f8e03b154b5c4d4822dacb
SHA256 feea4cca47165ab9afe9d11717570f1db7f8f853b2084c3b8c3db3588a2e519d
SHA512 13360f4722ca246327eb152a620bc32a548bb189c9e90fa00b33c055a9047259350a7db19a0d1bd6e4273e573cd7c43feff876ac4b04570747fea76ee6abafb1

Files

  • Cytomine-Python-Client-2.0.2/setup.py
  • Cytomine-Python-Client-2.0.2/setup.cfg
  • Cytomine-Python-Client-2.0.2/README.md
  • Cytomine-Python-Client-2.0.2/PKG-INFO
  • Cytomine-Python-Client-2.0.2/cytomine/utilities/wholeslide.py
  • Cytomine-Python-Client-2.0.2/cytomine/utilities/version.py
  • Cytomine-Python-Client-2.0.2/cytomine/utilities/reader.py
  • Cytomine-Python-Client-2.0.2/cytomine/utilities/logging.py
  • Cytomine-Python-Client-2.0.2/cytomine/utilities/http.py
  • Cytomine-Python-Client-2.0.2/cytomine/utilities/geometry.py
  • Cytomine-Python-Client-2.0.2/cytomine/utilities/descriptor_reader.py
  • Cytomine-Python-Client-2.0.2/cytomine/utilities/__init__.py
  • Cytomine-Python-Client-2.0.2/cytomine/models/user.py
  • Cytomine-Python-Client-2.0.2/cytomine/models/storage.py
  • Cytomine-Python-Client-2.0.2/cytomine/models/software.py
  • Cytomine-Python-Client-2.0.2/cytomine/models/social.py
  • Cytomine-Python-Client-2.0.2/cytomine/models/property.py
  • Cytomine-Python-Client-2.0.2/cytomine/models/project.py
  • Cytomine-Python-Client-2.0.2/cytomine/models/ontology.py
  • Cytomine-Python-Client-2.0.2/cytomine/models/model.py
  • Cytomine-Python-Client-2.0.2/cytomine/models/imagegroup.py
  • Cytomine-Python-Client-2.0.2/cytomine/models/image.py
  • Cytomine-Python-Client-2.0.2/cytomine/models/collection.py
  • Cytomine-Python-Client-2.0.2/cytomine/models/annotation.py
  • Cytomine-Python-Client-2.0.2/cytomine/models/__init__.py
  • Cytomine-Python-Client-2.0.2/cytomine/cytomine.py
  • Cytomine-Python-Client-2.0.2/cytomine/cytomine_job.py
  • Cytomine-Python-Client-2.0.2/cytomine/__init__.py
  • Cytomine-Python-Client-2.0.2/Cytomine_Python_Client.egg-info/top_level.txt
  • Cytomine-Python-Client-2.0.2/Cytomine_Python_Client.egg-info/SOURCES.txt

Uploaded

about 6 years ago

Package Size

35.9 KB

Downloads

26

wget

wget --content-disposition "https://packagecloud.io/cytomine-uliege/Cytomine-python-client/packages/python/Cytomine-Python-Client-2.0.2.tar.gz/download?distro_version_id=166"

Homepage

http://www.cytomine.org

License

LICENSE