yoav / testrepo / ubuntu / feisty / abyss_2.0.2-1~bpo8+1_arm64.deb
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abyss_2.0.2-1~bpo8+1_arm64.deb

STEP 1: Have you installed this repository?

If not, run this installation script command:

curl -s https://packagecloud.io/install/repositories/yoav/testrepo/script.deb.sh | sudo bash
copy 
curl -s https://packagecloud.io/install/repositories/yoav/testrepo/script.deb.sh | sudo bash



    

    
  


            

    
STEP 2: Install the package

      
sudo apt-get install abyss=2.0.2-1~bpo8+1

  


        

      

            
de novo, parallel, sequence assembler for short reads


  
Full description:
  de novo, parallel, sequence assembler for short reads
 ABySS is a de novo, parallel, sequence assembler that is designed for
 short reads. It may be used to assemble genome or transcriptome
 sequence data. Parallelization is achieved using MPI, OpenMP and
 pthread.



        
          

            
Checksums

            

  
    

      
        MD5
      
      
        9d9893227c1827aff2e1f2b2881bb425
      
    

    

      
        SHA1
      
      
        be285ba664654609750027123b4286647ddbd506
      
    

    

      
        SHA256
      
      
        4237e9e14a09feb502bb3492c52289c79181486bb04a849c84177b790fccdf97
      
    

    

      
        SHA512
      
      
        c7e54b4df7b69cfcd6b013b1be4b428344d259356aa25583b7c80b0b8211905350fe5cdd8738177187859901b53337206cc078dfadc17adf55753fada1dbedec
      
    

  



          

        




                

                  
Depends

                  
    
                    
  • make, libc6 (>= 2.17), libgcc1 (>= 1:4.7), libgomp1 (>= 4.9), libopenmpi1.6, libsqlite3-0 (>= 3.5.9), libstdc++6 (>= 4.9), perl
    • 
                  

                

                

                  
Suggests

                  
    
                    
  • openmpi-bin
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Files

  
    
      
  • /usr/share/man/man1/ABYSS.1.gz
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  • /usr/share/man/man1/abyss-tofastq.1.gz
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  • /usr/share/man/man1/abyss-pe.1.gz
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  • /usr/share/doc/abyss/README.md.gz
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  • /usr/share/doc/abyss/README.html
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  • /usr/share/doc/abyss/flowchart.pdf.gz
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  • /usr/share/doc/abyss/copyright
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  • /usr/share/doc/abyss/changelog.gz
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  • /usr/share/doc/abyss/changelog.Debian.gz
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  • /usr/lib/abyss/SimpleGraph
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  • /usr/lib/abyss/PopBubbles
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  • /usr/lib/abyss/PathOverlap
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  • /usr/lib/abyss/PathConsensus
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  • /usr/lib/abyss/ParseAligns
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  • /usr/lib/abyss/Overlap
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  • /usr/lib/abyss/MergePaths
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  • /usr/lib/abyss/MergeContigs
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  • /usr/lib/abyss/logcounter
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  • /usr/lib/abyss/konnector
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  • /usr/lib/abyss/KAligner
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  • /usr/lib/abyss/DistanceEst-ssq
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  • /usr/lib/abyss/DistanceEst
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  • /usr/lib/abyss/DAssembler
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  • /usr/lib/abyss/Consensus
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  • /usr/lib/abyss/AdjList
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  • /usr/lib/abyss/abyss-tofastq
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  • /usr/lib/abyss/abyss-todot
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  • /usr/lib/abyss/abyss-tabtomd
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  • /usr/lib/abyss/abyss-sealer
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  • /usr/lib/abyss/abyss-scaffold
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Uploaded

  over 5 years ago




  

    
Package Size

    1.25 MB
  

    

      
Installed Size

      6.85 MB
    




          
          

  
Downloads

  

    

      
14

    

    
  




          

  
wget

  
wget --content-disposition "https://packagecloud.io/yoav/testrepo/packages/ubuntu/feisty/abyss_2.0.2-1~bpo8+1_arm64.deb/download.deb?distro_version_id=6"




          
            

    
Homepage

    
      http://www.bcgsc.ca/platform/bioinfo/software/abyss