Cytomine_Python_Client-2.0.1-py3.5.egg

STEP 1: Have you installed this repository?

If not, run this installation script command:

curl -s https://packagecloud.io/install/repositories/cytomine-uliege/Cytomine-python-client/script.python.sh | bash
copy
curl -s https://packagecloud.io/install/repositories/cytomine-uliege/Cytomine-python-client/script.python.sh | bash

STEP 2: Install the package
sudo pip install cytomine-python-client==2.0.1

Python client to interact with Cytomine.

Full description:
  # Cytomine Python client
 > Cytomine-python-client is an open-source Cytomine client written in Python. This client is a Python wrapper around Cytomine REST API gateway.
 [![Build Status](https://travis-ci.com/Cytomine-ULiege/Cytomine-python-client.svg?branch=master)](https://travis-ci.com/Cytomine-ULiege/Cytomine-python-client)
 [![GitHub release](https://img.shields.io/github/release/Cytomine-ULiege/Cytomine-python-client.svg)](https://github.com/Cytomine-ULiege/Cytomine-python-client/releases)
 [![GitHub](https://img.shields.io/github/license/Cytomine-ULiege/Cytomine-python-client.svg)](https://github.com/Cytomine-ULiege/Cytomine-python-client/blob/master/LICENSE)
 ## Overview
 The main access point to Cytomine data is its REST API. This client is a Python package that can be imported in an application and allows to import/export data from Cytomine-Core and Cytomine-IMS using RESTful web services e.g. to generate annotation (spatial) statistics, create regions of interest (e.g. tumor masks), add metadata to images/annotations, apply algorithms on image tiles, ...
 See [documentation](http://doc.cytomine.be/display/ALGODOC/%5BDOC%5D+Data+access) for more details.
 ## Requirements
 * Python 2.7 | 3.5+
 ## Install
 **To install *official* release of Cytomine-python-client, see @cytomine. Follow this guide to install forked version by ULiege.**
 ### Manual installation
 To download and install manually the package, see [manual installation procedure](http://doc.cytomine.be/display/ALGODOC/How+to+install+the+Cytomine+Python+Client).
 ### Automatic installation
 To retrieve package using Maven or Gradle, see [package repository](https://packagecloud.io/cytomine-uliege/Cytomine-python-client).
 ## Usage
 See [detailed usage documentation](http://doc.cytomine.be/display/DEVDOC/Part+5%3A+Cytomine+Python+Client).
 ### Basic example
 Three parameters are required to connect:
 * `CYTOMINE_URL`: The full URL of Cytomine core (e.g. “http://demo.cytomine.be”).
 * `PUBLIC_KEY`: Your cytomine public key.
 * `PRIVATE_KEY`: Your cytomine private key.
 First, the connection object has to be initialized.
 TODO
 The next sample code should print “Hello {username}” where {username} is replaced by your Cytomine username and print the list of available projects.
 TODO
 ## References
 When using our software, we kindly ask you to cite our website url and related publications in all your work (publications, studies, oral presentations,...). In particular, we recommend to cite (Marée et al., Bioinformatics 2016) paper, and to use our logo when appropriate. See our license files for additional details.
 - URL: http://www.cytomine.org/
 - Logo: [Available here](https://cytomine.coop/sites/cytomine.coop/files/inline-images/logo-300-org.png)
 - Scientific paper: Raphaël Marée, Loïc Rollus, Benjamin Stévens, Renaud Hoyoux, Gilles Louppe, Rémy Vandaele, Jean-Michel Begon, Philipp Kainz, Pierre Geurts and Louis Wehenkel. Collaborative analysis of multi-gigapixel imaging data using Cytomine, Bioinformatics, DOI: [10.1093/bioinformatics/btw013](http://dx.doi.org/10.1093/bioinformatics/btw013), 2016.
 ## License
 Apache 2.0
 ----
 See examples in https://github.com/cytomine/Cytomine-python-client/tree/master/client/examples and https://github.com/cytomine/Cytomine-python-client/tree/master/utilities/examples
 The client is automatically installed with the Docker/Bootstrap procedure, however it is possible to install it independently
 on remote computers. See installation instructions here:
 http://doc.cytomine.be/pages/viewpage.action?pageId=12321357

Checksums

MD5 b1418e6d73c1e6439d506bf848e6e49f
SHA1 753bb4e8bf337aee63b8ecbd871ecb3a6d840883
SHA256 5ce2989ea4c3b66060f7eb0bf439ce128dc59d45dbe2337abae736c82c19f0c8
SHA512 b90a896ea18aff0f69b6f0a720e43b513ce35e09c05e48787062648f6caf5c3e7d0a6c9674bcd83efb5a84cd96e465af28855f27a39da32aa124021d825bbafc

Files

  • EGG-INFO/zip-safe
  • EGG-INFO/top_level.txt
  • EGG-INFO/SOURCES.txt
  • EGG-INFO/requires.txt
  • EGG-INFO/PKG-INFO
  • EGG-INFO/dependency_links.txt
  • cytomine/utilities/wholeslide.py
  • cytomine/utilities/version.py
  • cytomine/utilities/reader.py
  • cytomine/utilities/logging.py
  • cytomine/utilities/http.py
  • cytomine/utilities/geometry.py
  • cytomine/utilities/descriptor_reader.py
  • cytomine/utilities/__pycache__/wholeslide.cpython-35.pyc
  • cytomine/utilities/__pycache__/version.cpython-35.pyc
  • cytomine/utilities/__pycache__/reader.cpython-35.pyc
  • cytomine/utilities/__pycache__/logging.cpython-35.pyc
  • cytomine/utilities/__pycache__/http.cpython-35.pyc
  • cytomine/utilities/__pycache__/geometry.cpython-35.pyc
  • cytomine/utilities/__pycache__/descriptor_reader.cpython-35.pyc
  • cytomine/utilities/__pycache__/__init__.cpython-35.pyc
  • cytomine/utilities/__init__.py
  • cytomine/models/user.py
  • cytomine/models/storage.py
  • cytomine/models/software.py
  • cytomine/models/social.py
  • cytomine/models/property.py
  • cytomine/models/project.py
  • cytomine/models/ontology.py
  • cytomine/models/model.py

Uploaded

about 6 years ago

Package Size

128 KB

Downloads

44

wget

wget --content-disposition "https://packagecloud.io/cytomine-uliege/Cytomine-python-client/packages/python/Cytomine_Python_Client-2.0.1-py3.5.egg/download?distro_version_id=166"

Homepage

http://www.cytomine.org

License

LICENSE